AT5G52800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA primases | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA primases; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA primase, UL52/UL70 type, Herpesviridae (InterPro:IPR004340); Has 175 Blast hits to 154 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 0; Plants - 41; Viruses - 8; Other Eukaryotes - 46 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21396053..21398813 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 58075.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.80 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||
| Length | 506 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKKLSSNSM DDVDRLFQCF KCGISPPASA MREKKRSKKM LNSEYDSPVT CKKLQLSSLS RLSGKRGERN QIDGSVSVDS VSGSRDVKKS VGRQFSPIVF 101: YGSPNGVPPK KPLSLLRLLR EIRIDLSEER KAISRKGVWA TFPRQEEAIK FEKRHDNVRI FSYQDHFSGQ RRFLVSSYEE FWKRYLSMDP RHRHHYEVIQ 201: EGLPCHMYFD LEFNQKENEG KNVDEMVDIL ISVILEALRE KYAIEGQEDW IVELDSSTKD KFSRHVIVII PKVAFKDNSH VGAFVGELCS RIVNAKETDE 301: RLRKLFVHKE ANDSASLLFV DTAVYSRNRC FRLALSSKAG KTSVLLPTGR FKCKDMGERD VFMTSLICNV ESDCEKLLVC KMESDCMKTL CFDTEVNSNN 401: LVRDQNAQKF QLNASTSDMS TSYFGGKSPF PQLDQFIEST ASTGNVPGKI RCWYWFSEDG LIVYSMLRNR YCERIGREHK SNHGTICSQP IYDIRVSSML 501: CNLCTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)