AT5G52790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.920 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CBS domain-containing protein with a domain of unknown function (DUF21) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21391740..21394327 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55130.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||||||||||
| Length | 500 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAANDVPCCE TMFWVYLLVC VALVVFAGLM SGLTLGLMSL SIVELEVMIK AGEPHDRKNA EKILPLVKNQ HLLLCTLLIG NALAMEALPI FVDSLLPAWG 101: AILISVTLIL AFGEIIPQAV CSRYGLSIGA KLSFLVRLII IVFFPLSYPI SKLLDLLLGK RHSTLLGRAE LKSLVYMHGN EAGKGGELTH DETTIISGAL 201: DMSQKSAKDA MTPVSQIFSL DINFKLDEKT MGLIASAGHS RIPIYSVNPN VIIGFILVKN LIKVRPEDET SIRDLPIRRM PKVDLNLPLY DILNIFQTGR 301: SHMAAVVGTK NHTNTNTPVH EKSINGSPNK DANVFLSIPA LNSSETSHQS PIRYIDSISD EDEEVIGIIT LEDVMEELIQ EEIYDETDQY VELHKRITIN 401: MPMSGNSPET ATWASELASP ISPYRSSLLS PSIMISTLLR SPINSPYRHS LLLRPTLHAS PPAQSPSILS PDSNNERYYY LSPSRVLRKS YEKLSRSNGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)