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AT5G52720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.794
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Copper transport protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Copper transport protein family; BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT5G52670.1); Has 113 Blast hits to 106 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G52720EnsemblPlants:AT5G52720.1entrez:835349
GeneID:835349Gramene:AT5G52720.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF129
KEGG:ath:AT5G52720PaxDb:F4KHL6ProteinModelPortal:F4KHL6Proteomes:UP000006548
RefSeq:NP_200084.2SMR:F4KHL6TAIR:AT5G52720UniGene:At.49425
UniGene:At.67530UniProt:F4KHL6
Coordinates (TAIR10) chr5:+:21378914..21379543
Molecular Weight (calculated) 12579.50 Da
IEP (calculated) 10.14
GRAVY (calculated) -0.58
Length 111 amino acids
Sequence (TAIR10)
(BLAST)
001: MQETVVFEWG SFDVRTKEKA MKVVCEFPGV TVIDVKERGK LKVTGQFDKF IMTKKLKKIC DYVDITAVGP EGQPAQNRNP VKKPEPKVIR GRPYPPQKKT
101: PGKNSDECII L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)