AT5G52640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : heat shock protein 90.1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
heat shock protein 90.1 (HSP90.1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: defense response to bacterium, response to heat, response to arsenic; LOCATED IN: cytosol, cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HEAT SHOCK PROTEIN 81.4 (TAIR:AT5G56000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21352542..21355147 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81184.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.67 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 705 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADVQMADAE TFAFQAEINQ LLSLIINTFY SNKEIFLREL ISNSSDALDK IRFESLTDKS KLDGQPELFI RLVPDKSNKT LSIIDSGIGM TKADLVNNLG 101: TIARSGTKEF MEALQAGADV SMIGQFGVGF YSAYLVAEKV VVTTKHNDDE QYVWESQAGG SFTVTRDVDG EPLGRGTKIT LFLKDDQLEY LEERRLKDLV 201: KKHSEFISYP IYLWTEKTTE KEISDDEDED EPKKENEGEV EEVDEEKEKD GKKKKKIKEV SHEWELINKQ KPIWLRKPEE ITKEEYAAFY KSLTNDWEDH 301: LAVKHFSVEG QLEFKAILFV PKRAPFDLFD TRKKLNNIKL YVRRVFIMDN CEELIPEYLS FVKGVVDSDD LPLNISRETL QQNKILKVIR KNLVKKCIEM 401: FNEIAENKED YTKFYEAFSK NLKLGIHEDS QNRGKIADLL RYHSTKSGDE MTSFKDYVTR MKEGQKDIFY ITGESKKAVE NSPFLERLKK RGYEVLYMVD 501: AIDEYAVGQL KEYDGKKLVS ATKEGLKLED ETEEEKKKRE EKKKSFENLC KTIKEILGDK VEKVVVSDRI VDSPCCLVTG EYGWTANMER IMKAQALRDS 601: SMSGYMSSKK TMEINPDNGI MEELRKRAEA DKNDKSVKDL VMLLYETALL TSGFSLDEPN TFAARIHRML KLGLSIDEDE NVEEDGDMPE LEEDAAEESK 701: MEEVD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)