AT5G52330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like superfamily protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 1080 Blast hits to 1018 proteins in 130 species: Archae - 0; Bacteria - 2; Metazoa - 66; Fungi - 144; Plants - 828; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21247596..21249732 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46776.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||
| Length | 397 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKTDVDDEY GLKPSELYGK NTWKIKKFSQ ISKREFASSV FEIGGYSWHI LMYPEGCDVS NHLSLFLCVA NHDELLPGWS QLAQFTISVM HKDPKKSKFS 101: DTLHRFWKKE HDWGWKKFME LPKLRDGFID DSGCLTIETK VQVIRDRVDR PFFLDYGYKT EIVRVYFRNI EQIFLRFVEE RRSKLEKLIE DKAKWTSFGV 201: FWLGMDKNSR REMSREKMDV ILKGFVKHFF MENVVTSPIA MDCLYNGLKD LEVQTKNKKA SPKLLDDKEL PAPFVKVDRD MFVLVDDDVL LLLERAALLE 301: RAAPEPLPPK DDKALQNRIK EDKDEEDINK EAYEICLNEW GRRTVEIFVL DHIFSKIEVA YKEAIALKRQ EELIREEEET SKRSKVLKKG FGKCRLN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)