AT5G52290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.962 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : shortage in chiasmata 1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SHORTAGE IN CHIASMATA 1 (SHOC1); Has 68 Blast hits to 59 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 8; Fungi - 4; Plants - 40; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21230353..21236554 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 179464.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 1594 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRTRFLNIDY FSTPPSHVFE TLGFLNLPAP DNFPAPIVYN GEEDRLRFGS IENVSIPIGN LPIEAALSKF LSDVVPDRVS VDYRVFEIDD SSLGVYYSDE 0101: KDDGDAIADK ATPKIIELET PELDFEMENK LLCTSEDHLQ CFSEVLEIKN DPVKYEGSDI ILQNSKDIQE QIYSVDYIPS DYFTENNTSV AENECFRKIQ 0201: PWFKDARFPL LEVDEVNLSE LSSLSVLDKV FTVLETIEPQ DTNAGSSLII NSKELIGSKD YDLLDVLSTD CYLNKSGQSD VVPEDEFSEM DIVTILEISN 0301: AEEFQGKVAV PVTYEEFQIL DVDISDVFDI FLCLQKAIEP EICYGMFSKE MNFKDFDELV VSSELAFTDD AFKSLPTPIL HDYEMTRSLE LIYEDVLSKI 0401: KPQSLSASND IYLPWNLLEE RNHNHCDYPF EEIVTFNIDY NWEASEGDKW VYDFIFSEDA FCEPLVEKCT EPFYGISNLD EHAPVNTSHG LLENPFQKTG 0501: ARDCAVDDNA KKATLLFKSM SAFDDLTFFM DPKKAVIEDN LESRVEAAKT TNHKCMSIDS KASCRSGGMH PNPKTEEMIL HSVRPSENIQ ALVGEFVKSY 0601: LTLVKDESEN LSEDKLKLLS ISKGKLIDCI RKANVHKTQL ADDKTFTFAL LLAIKQMTWY MCFFGIHVAY IYLNKVCRSS NPMKIGLHTL YSAVETEHKS 0701: DETDITRSHP SLAVIQGILQ SEFARGNSKA LLLAEKVFWS SLKRLLMSMG LSYNDLNSPS PSGNRPNVHE AIELGFLPIS DCLIISYEQI SPSFPVENFS 0801: VIVEYGGPNA SPRYSFPSKL DSFPSFHFIK VELDMPSACG QLCAGVTVPY SLKMIKGDEV ETKTGWLEEV LNFVPLEKVC YAGSSETTNE SEFISMPQES 0901: ERKRGIIEQG LSDQRSVIVV NTKTVDKEMI ISRRSTYQKV LAMEKEGVQV VERDSDLPVD LMLSPAVCLL WYDSETVSKK SAATIGTSSS SLSWIGDIAT 1001: NVLTSLSFSF STCIMVFEGE PAFLAAVMDS SDELYAAAGS LGISLQMFCS SSANLTDEII LKCIKSSVKL SKLHVKMPES ESLAESFLTK FPSVNPLTAQ 1101: VILSSSGSLL EFMKLPHKSK VERTQKYHVP EESVDLFSSV CRYGAREDSR SVMTDSSSSV SSGPDSDTHH VSVHSGSKKK QYIAEKDEID MDDLVHFSPS 1201: IEFADTQLKS SGDFQLDDSW SSKDHEIFHF DPVTEFSDAP FKPSGISHPN DSWPSKDPER FDKKSGPGSS SKDTFWEKDQ PDFSVEDSLP GIPELEDWSF 1301: PVKDKFMSQN RGCKFPVMRD FNLHDNRNSE NFIADYKGEV IDRADKYLEE DFPPSPGYNR FARIVSDVNE EELPRKSKSS RKLSFFGSLQ PNFPKAADID 1401: SSSERYATEK DSKYDNNTSL RGYADNYPAK RQRTLLEEVL TRRSAVPTTE LPFREEISHF GGSPLSNAIR SSNQVQSSPW TVDFLNRVRE RSRARKQQQS 1501: LPSYASPPSL ETPGNIKKAN TKRKSPSILE FFKYKGGNKL QEEKRQKRSK NSSASPKNER FYSPLKSCTP IDKRAKQSLS YTANGTGQTK LVWK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)