AT5G52180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.565 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21200165..21201541 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51116.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.85 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.46 | ||||||||||||||||||||||||||||
| Length | 458 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLELLGSYRN LTLQILLSLF LTLVLSFVKI SIIFLHGLCT YIQPENLNQN NTGNGLRPAI RRPSSTDDPK SNVEVRRRNR SKDKSEFDES NAQIFRIKLD 101: EDHLRSRMYF TEYNSLFVIS FLAVSCFLLD KYFGIIEDNS HGVLSNGLMF PIVLGFIALC KVFVALGKIS IERSASKESE KRLSLIFGVL GFVFGIIISA 201: GVFPKGFDFQ LGSVDAFCCI VISFSMACIG GFLYMPAGRS ARSFWVGTDQ IRSNLSIISC GWFGRMILYA NYIVSVFTSL LWIHPLAEVL VKRSGDPGTS 301: GSSQSQSGLV GNVGMLSDDF AKFRVLCLLL SGLLQAMAVR PNLQMFLNEA VLSWYQRLHG SKTPDLDFSR AKMFLHNHYL CLVALQFLAP SVLVILFLGL 401: SQIDLSSFAV SQLVCGSLPC SDFIKQVGLL MSWWVLFVWS GFTSASLVFY RRGVLYVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)