AT5G51540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zincin-like metalloproteases family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT1G67690.1); Has 5499 Blast hits to 5482 proteins in 1556 species: Archae - 6; Bacteria - 3417; Metazoa - 330; Fungi - 489; Plants - 134; Viruses - 0; Other Eukaryotes - 1123 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20932071..20936284 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79928.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.87 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 706 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWKLTRRLQP HINSTRWLVR NFRNGGAGDA TGLYGFDHLK TAKGFQRFVA DAIERSGELV SYISGMPSSP EIIKAMDEIS DTVCCVVDSA ELCRQTHPDR 101: EFVEEANKAA IEMNDYLHHL NTNHTLYAAV KKAEQDSNLL TKEASRTAHH LRMDFERGGI HLDPEKLDKV NNLTTNIFQL CREFSENIAD DPGHVDIFPG 201: SRIPRHLHHL LNPTYRSTSG GSRGSTRSAH KSKQKGFRIN TDPRTVSSIL QWTSDEEVRK MVYIQGNSVP HANHGVLEKL IAARHELSQM MGCNSYADIM 301: VEPNLAKSPK VVTSFLQELS KTVKPKADEE FIAIRDFKRE KCGNPSAELE PWDETYYTSM MKSSINDVDT AVVASYFPLP QCIEGLKVLV ESLFGATFHT 401: IPLAPGESWH PNVVKLSLHH PDEGDLGYLY LDLYSRKGKY PGCASFAIRG GRKISETEYQ LPVIALVCNF SRACDSSIVK LNHSEVEVLF HEFGHALHSL 501: LSRTDYQHFS GTRVALDLAE MPSNLFEYYA WDYRLLKRFA RHYSTGETIP EKLVNSLQGA RNMFAATEMQ RQVFYALIDQ MLFGEQPETA RDVSHLVAEL 601: KRQHTSWNHV EGTHWYIRFS HLLNYGAGYY SYLYAKCFAS TIWQSICEED PLSLNTGTLL REKFFKHGGA KDPAELLTDL AGKEIISVHG EGIVPATTYL 701: LNELRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)