AT5G51470.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.986 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Auxin-responsive GH3 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G23160.1); Has 1306 Blast hits to 1254 proteins in 211 species: Archae - 0; Bacteria - 361; Metazoa - 54; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:20907287..20909340 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65769.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||
| Length | 581 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLCSDLTEK LDEEILEDLT SNVKQIQDNV LEEILTLNAN TEYLRRFLHG SSSKELFKKN VPVVTYEDVK PFIDRVTNGE PSDIISGNPI TGFLLSSGTS 101: GGKQKMFPRN NKYLENIKFI FYYRSLVISK HIDGLEHGKG MVFNFCTSEN TTPSGLPSSA ASTSFFKSDY FKNRPSYWHW SYTSPDEVIL CSDTKQTLYC 201: HLLCGLVQRD DVVKVGAAFV TILVRAINLL ENSWKEICTN IRFGHLSEWI TDISCRDSVS KILGEPNPEL ADLIENECNN KSWEGIVPRL WPKAKFIECI 301: ATGQMAQHIP TLEFYSNKLP SISSSYVSSE TMFGINMSPL CKPENVSYTF LPNLSYFEFL LVDAGDKTEI VDLVDVKLGC YYEPLVTNHS GLHRYKMGDI 401: LLVTGFYNNA PQFRFVRRGN LTLSIHLEIT TDEDLLNAVT DAKMVLESSN LMLMDFTSYA DISTTPGHYV LYWELKAKYR NDIVEIDKNV LVECCYVVEE 501: SLNNSYRVYR SKGGLIGALE IRLVQQGTFD ALMEFFITQG ASSTQYKTPI CIKSTEALVI LEENVHACFF TDKSLSLNFS S |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)