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AT5G51360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Transcription elongation factor (TFIIS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription elongation factor (TFIIS) family protein; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50373.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB025621EMBL:CP002688EnsemblPlants:AT5G51360EnsemblPlants:AT5G51360.1
entrez:835210Gene3D:1.20.930.10GeneID:835210GO:GO:0003677
GO:GO:0003746GO:GO:0005634GO:GO:0006351Gramene:AT5G51360.1
HOGENOM:HOG000152461InterPro:IPR003617InterPro:IPR017923KEGG:ath:AT5G51360
KO:K03145OMA:KAVIDHWPfam:PF08711Pfscan:PS51319
PhylomeDB:Q9FGN5PROSITE:PS51319Proteomes:UP000006548RefSeq:NP_199949.1
SMART:SM00509SUPFAM:SSF47676TAIR:AT5G51360UniGene:At.55487
UniProt:Q9FGN5
Coordinates (TAIR10) chr5:+:20871918..20872277
Molecular Weight (calculated) 13709.90 Da
IEP (calculated) 11.45
GRAVY (calculated) -0.52
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSDDLPPP PRVNDHVKTR RNRKRRTIKT KQLEELISTA TRAAHVARDK GFYIVSPEAI QCVEILRHMR TLPLNARLIT KTDGLRVLLF LSKNGNPKIR
101: SESKAVIDHW KSILHTKVH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)