AT5G51030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.974 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G61830.1); Has 71841 Blast hits to 71789 proteins in 3167 species: Archae - 666; Bacteria - 49161; Metazoa - 4545; Fungi - 3057; Plants - 2484; Viruses - 2; Other Eukaryotes - 11926 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20747862..20749352 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35189.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.94 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||
| Length | 314 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGSKEKSKE KRDKRLQEIS LLRTIPYSDH QRWWTSETVA VVTGANRGIG FEMVRQLAGH GLTVILTSRD ENVGVEAAKI LQEGGFNVDF HRLDILDSSS 101: IQEFCEWIKE KYGFIDVLIN NAGVNYNVGS DNSVEFSHMV ISTNYYGTKN IINAMIPLMR HACQGARIVN VTSRLGRLKG RHSKLENEDV RAKLMDVDSL 201: TEEIVDKTVS EFLKQVEEGT WESGGWPHSF TDYSVSKMAV NAYTRVLAKE LSERPEGEKI YANCFCPGWV KTAMTGYAGN VSAEDGADTG VWLALLPDQA 301: ITGKFFAERR EISF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)