AT5G50900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3124 Blast hits to 1989 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 424; Fungi - 362; Plants - 2044; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20705051..20706718 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59273.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.89 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.23 | ||||||||||||||||||||||||||||||||
| Length | 555 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTVPNSDDGD RSLTEVITSL IDSIPNLLSF KCKWSSIRAK LADLKTQLSD FSDFAGSSSN KLAVDLLVSV RETLNDAVAV AARCEGPDLA EGKLKTQSEV 101: DSVMARLDRH VKDAEVLIKS GLLIDNGIVV SGFSISSKKE AVRLEARNLV IRLQIGGVES KNSAIDSLIE LLQEDDKNVM ICVAQGVVPV LVRLLDSCSL 201: VMKEKTVAVI SRISMVESSK HVLIAEGLSL LNHLLRVLES GSGFAKEKAC VALQALSLSK ENARAIGCRG GISSLLEICQ GGSPGSQAFA AGVLRNLALF 301: GETKENFVEE NAIFVLISMV SSGTSLAQEN AVGCLANLTS GDEDLMISVV REGGIQCLKS FWDSVSSVKS LEVGVVLLKN LALCPIVREV VISEGFIPRL 401: VPVLSCGVLG VRIAAAEAVS SLGFSSKSRK EMGESGCIVP LIDMLDGKAI EEKEAASKAL STLLVCTSNR KIFKKSDKGV VSLVQLLDPK IKKLDKRYTV 501: SALELLVTSK KCRKQVVAAG ACLHLQKLVD MDTEGAKKLA ENLSRSKIWG VFTRP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)