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AT5G50640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (TAIR:AT5G50530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0517eggNOG:ENOG410IF96EMBL:AB025619EMBL:AK117882
EMBL:AK230278EMBL:CP002688EnsemblPlants:AT5G50530.1EnsemblPlants:AT5G50640
EnsemblPlants:AT5G50640.1entrez:835121entrez:835133ExpressionAtlas:Q0WLC7
GeneID:835121GeneID:835133Genevisible:Q0WLC7GO:GO:0016021
hmmpanther:PTHR13780hmmpanther:PTHR13780:SF45HOGENOM:HOG000238622InParanoid:Q0WLC7
InterPro:IPR000270InterPro:IPR000644iPTMnet:Q0WLC7KEGG:ath:AT5G50530
KEGG:ath:AT5G50640PaxDb:Q0WLC7Pfam:P0DH79Pfam:PF00564
Pfam:PF00571Pfam:Q0WLC7Pfscan:PS51371Pfscan:PS51745
PhylomeDB:Q0WLC7PRIDE:Q0WLC7PRO:PR:Q0WLC7PROSITE:PS51371
PROSITE:PS51745ProteinModelPortal:Q0WLC7Proteomes:UP000006548RefSeq:NP_568736.1
RefSeq:NP_680412.1SMART:SM00116SMART:SM00666SMR:Q0WLC7
STRING:3702.AT5G50640.1SUPFAM:SSF54277SUPFAM:SSF54631TAIR:AT5G50530
TMHMM:TMhelixUniGene:At.29723UniGene:At.49157UniGene:At.75569
UniProt:P0DH79UniProt:Q0WLC7
Coordinates (TAIR10) chr5:-:20605218..20608264
Molecular Weight (calculated) 59815.90 Da
IEP (calculated) 6.17
GRAVY (calculated) -0.22
Length 548 amino acids
Sequence (TAIR10)
(BLAST)
001: MANQGGPSRK SLSFSGHSFQ GRKKASENEG GGGGGSDLLP RRSLTSSRSS ISLSGERSGE RTVKRLRLCK ALTVPDSTTL FEACRRMAAR RVDALLLTDS
101: NALLCGILTD RDIATKVIAK QLNLEETPVS KVMTKNPVFV LSDTIAVEAL QKMVQGKFRH LPVVENGEVI ALLDIAKCLY DAIARMERSV EKGKAIAAAV
201: EGVEKNWGTS IAGPNTFMET LRERIFKPSL STIIPENTKV LKVGLDETVL GVTMKMVEYQ SSAAMVMVEN KLVGILTSKD ILMRVISQNL PQETTTVEKV
301: MTPNPESATV DMAIVEALHI MHNGKFLHLP VLDKDGDVVA VIDVIHITHA AVTTAGSTAG INNETANSMM QKFWDSAMAL SPNEDGDETR SEEESMKLSS
401: EIEVTKSFSY PNTFAFKLQD KKGRMHRFMC ETQSLTTLIT AILQRMGDDI EPDNLPQIMY EDEDNDKVVL ASDNDLGAAV EHAKSIGWKG LKLHLDYTEE
501: RGHRRGLSSE DMDYDQSNSW AAAYKTVAAG AALAAGLGVL VYLKRNSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)