AT5G50170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.740 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2 calcium/lipid-binding and GRAM domain containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2 calcium/lipid-binding and GRAM domain containing protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), GRAM (InterPro:IPR004182), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding and GRAM domain containing protein (TAIR:AT1G03370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20421150..20425524 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115865.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.71 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1027 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRLYVYILQA KDLPAKETFA KLHVGRHKSK TRVARDTSSP IWNEEFVFRI SDVDEGDDVV VSILHHEQQD HQSIVSTGLI GKVRIPLTSV AAEENQTLLP 0101: TWFVIEKPSD GKFVNIECGK ILLSLSLQGK WESTSGEKVL NDKQDIINLE GVKELEGSPK DLISSRDGKR RKHHDGKHIM KNIVNHIDKL FHKKEEISKR 0201: LHDESSVGQS VNSNYEDATD QCSSSATCTG FEEGLDLMQS SDSEREEMPE NLTGGVLVDQ KYLVSPCELN KFLFTPSSQF RKELAELQGL SDVQEGPWTM 0301: MQEDTPRLTR VVTYMRAATK MVKAVKATEN QVYRKASGKQ FAVFVSVSTP DVPYGNTFKI ELLYKILPET EPTAGGEASR LIISWGIQFS QSTIMKGMIE 0401: GGARQGLKES FEQFSNLLAK TYKTLDPAVV LDKEQVIATV QSEPKTDLKS AFLYFWSSSV ICAVLLSVYV VVHMLHCEPS KIQGFEFYGL DLPDSFGELF 0501: SSGILVLLLE RVYIMTVHFV QARLHRGRDQ GVKANGKGWI LTIALIKGTN LASVEATELF DPYVVFTCNG KTRTSSVKLQ AQDPQWNEVI EFDAMEEPPS 0601: VLDVEVFDFD GPFDQGASLG HAEINFLKHT ADELADLSVA LVGNHAQASQ SKLQLRIFLE NKNGVETMKD YLSKVEKEVG KKLNIRSPQK NSAFQKLFGL 0701: PHEEFLLKEY TCYLKRKLPV QGKLFLSARI VAFYSNVFGH KTKFYFLWED IDDIQVLPPT FASLGSPLLL IILKKNRGLD AKHGAKSQDD EGRLSFYFQS 0801: FVSFDATSRT IMALWKTRTL SVDHRAQIVE EDQDVADPFL LPEAVTVVSD ADALMMSKVY TCDLPCDVEL VMKIFGGGEL ERKIMEKSGC LSYASTTWES 0901: KKPGVYERRL SYKYNHYVSV FGGGVTCAQQ KSPAPNDEGW ILNEIVALHD VPFGDHFRVH IRYEVKKAGV DCKTSKCEVY LKIRWLKTIK FEQRISKSIM 1001: EKFRNRFKVI FDLFQKESVA NSSLTLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)