AT5G50080.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ethylene response factor 110 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ethylene response factor 110 (ERF110); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G33710.1); Has 6196 Blast hits to 5849 proteins in 257 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6176; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:20365948..20366835 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24258.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.45 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 220 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSAMVSALTQ VVSARSQTEA EGAHSSSSSA GHKRGWLGID SAPIPSSFAR VDSSHNPIEE SMSKAFPEEA REKKRRYRGV RQRPWGKWAA EIRDPHRAAR 101: VWLGTFDTAE AAARAYDEAA LRFRGNKAKL NFPEDVRILP PPPPLLRSPA DTVANKAEED LINYWSYTKL LQSSGQRSFL ERGQEESSNI FEHSPMEQPL 201: PPSSSGPSSS NFPAPSLPNT |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)