AT5G49830.3
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.881 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : exocyst complex component 84B | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exocyst complex component 84B (EXO84B); LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: Vps51/Vps67 family (components of vesicular transport) protein (TAIR:AT1G10385.1); Has 307 Blast hits to 283 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 55; Plants - 127; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:20250803..20254766 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86326.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||
| Length | 783 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAKTARSKA TPTKENGVRV EEGLSLFKSD KFDADAYVQS KCSINEKEIV IVEWILGSSR FYTLEKMMSN VTILIACMDI KQLCSYLLDL KRASAEEMRR 101: SVYANYPAFI RTSKEISDLE GELSSIRNLL STQATLIHGL ADGVNIDDDK VSDESLANGL LNFEDNGLSD LEKWATEFPD HLDALLAERR VDEALAAFDE 201: GEILVSQANE KHTLSSSVLS SLQFAIAERK QKLADQLAKA ACQPSTRGGE LRSAIAALKR LGDGPRAHTV LLDAHFQRYQ YNMQSLRPSS TSYGGAYTAA 301: LSQLVFSAIS QASSDSLGIF GKEPAYSSEL VTWATKQTEA FSLLVKRHAL ASSAAAGGLR AAAECAQIAL GHCSLLEARG LSLCPVLLKH FKPIVEQALE 401: ANLKRIEENT AAMAAADDWV LTSPPAGSRH ASTAFQNKLT SSAHRFNLMV QDFFEDVGPL LSMQLGSKAL EGLFRVFNSY VDVLVRALPG SIEEEDPNFE 501: SSCNKIVQMA ETEANQLALL ANASLLADEL LPRAAMKLSL DQTGQRTDDL RRPLDRQNRN PEQREWKRRL LSTVDKLKDA FCRQHALDLI FTEEGDSHLS 601: ADMYVNIDEN GEDVDFFPSL IFQELFAKLN RMASLAADMF VGRERFAISL LMRLTETVIL WLSGDQSFWD DIEEGPRPLG PLGLRQLYLD MKFVICFASQ 701: GRYLSRNLHR GTNEIISKAL AAFTATGIDP YSELPEDDWF NDICVDAMER LSGKTKGNNG DVHSPTASVS AQSVSSARSH GSY |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)