AT5G49620.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb domain protein 78 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the R2R3 factor gene family. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb domain protein 78 (MYB78); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 108 (TAIR:AT3G06490.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20137491..20139384 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37116.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||||||
| Length | 321 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG 101: NSNEFDHKFS SSCEDRWSKI AQYLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSQQFKDTM KYLWMPRLVE RIQAASIGSV SMSSCVTTSS DQFVINNNNT 201: NNVDNLALMS NPNGYITPDN SSVAVSPVSD LTECQVSSEV WKIGQDENLV DPKMTSPNYM DNSSGLLNGD FTKMQDQSDL NWFENINGMV PNYSDSFWNI 301: GNDEDFWLLQ QHQQVHDNGS F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)