AT5G49290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.800 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 56 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 56 (RLP56); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 14 (TAIR:AT1G74180.1); Has 112100 Blast hits to 30260 proteins in 1125 species: Archae - 53; Bacteria - 8278; Metazoa - 26127; Fungi - 1038; Plants - 68577; Viruses - 23; Other Eukaryotes - 8004 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19980195..19983869 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102456.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.92 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 908 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLLGHLHGF SSCIEKERKA LLELKKFVMS RCEECEYDSV LPTWTNDTKS DCCQWENIKC NRTSRRLTGL SLYTSYYLEI SLLNLSLLHP FEEVRSLDLS 101: NSRLNGLVDD VEGYKSLRRL RNLQILNFSS NEFNNSIFPF LNAATSLTTL SLRRNNMYGP IPLKELKNLT NLELLDLSGN RIDGSMPVRE FPYLKKLKAL 201: DLSSNGIYSS MEWQVFCEMK NLQELDLRGI NFVGQLPLCF GNLNKLRFLD LSSNQLTGNI PPSFSSLESL EYLSLSDNSF EGFFSLNPLT NLTKLKVFIF 301: SSKDDMVQVK IESTWQPLFQ LSVLVLRLCS LEKIPNFLMY QKNLHVVDLS GNRISGIIPT WLLENNPELE VLQLKNNSFT IFQMPTSVHN LQVLDFSENN 401: IGGLFPDNFG RVLPNLVHMN GSNNGFQGNF PSSMGEMYNI SFLDLSYNNL SGELPQSFVS SCFSLSILQL SHNKFSGHFL PRQTNFTSLI VLRINNNLFT 501: GKIGVGLLTL VDLCILDMSN NFLEGELPPL LLVFEYLNFL DLSGNLLSGA LPSHVSLDNV LFLHNNNFTG PIPDTFLGSI QILDLRNNKL SGNIPQFVDT 601: QDISFLLLRG NSLTGYIPST LCEFSKMRLL DLSDNKLNGF IPSCFNNLSF GLARKEEITN YYVAVALESF YLGFYKSTFV VENFRLDYSN YFEIDVKFAT 701: KQRYDSYIGA FQFSEGTLNS MYGLDLSSNE LSGVIPAELG DLFKLRALNL SHNFLSSHIP DSFSKLQDIE SLDLSYNMLQ GSIPHQLTNL TSLAIFNVSY 801: NNLSGIIPQG KQFNTFDENS YLGNPLLCGP PTDTSCETKK NSEENANGGE EDDKEVAIDM LVFYWSTAGT YVTALIGILV LMCVDCSWRR AWLRLVDAFI 901: ASAKSKLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)