AT5G49150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : gamete expressed 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a transmembrane domain containing protein expressed in sperm cells. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
gamete expressed 2 (GEX2); CONTAINS InterPro DOMAIN/s: Filamin/ABP280 repeat (InterPro:IPR001298), Immunoglobulin-like fold (InterPro:IPR013783), Immunoglobulin E-set (InterPro:IPR014756), Filamin/ABP280 repeat-like (InterPro:IPR017868); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19924760..19928527 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100594.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 914 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGIFNIVID EENFKVLDSS LHFEVEAGLM YPSVSVVSWM GLANVFEAGM NASILILPKD AFGNNISFSG KKMEFQEFSL SLISENGSFA GVLNSTHIRW 101: IVSGYISIDF VLVTSGKFLL LVEKESQTLN GGPLPLEVNS GPLDVSNCVS IWKSELSTWQ IFSKMEILLH QKDRFGNIVS GFYEFDADVV EVETGLSIPV 201: ADFQFEYVEP GIQLMSFTLS EPGNFLLTLS DMKHNKSISS MPYVYTVYIG YCDGSRSIVN GSGINASIAG ESLGFSVYLK DAYGYPSPVQ VDRLQVRIVL 301: EIDSSIILPT IQPREALNGT GSSHQAATPL YEKHGGRASG NLVTQASIFD VTYTPKRTGI YRIFISSGNI VLNGGQPFIK EVYAGEVNVA ACSVTQFNGK 401: VPKEIKNEIV VLLLDGFYNP VPSQPSRLKF EITSANTSSF TTWEFVDNND GTYTGSYLAM EVGTYRMCIS FDNKHIQPCP FDVNVYSNGY FPRAYDDPVN 501: VWEDESISFN PLENDYFAGD NASMLGFSQP GHGSLLRDGN LLRYTPMKNF SGNDSFLYTI ADINGNLAAA TVYIFVLTAP PQFVSFSGGL QATEDLISPR 601: YGGFSGLEIS YSDLLENISV MVQALSGSVI LSPMLMQFRP PGSGKLSVSN GGEDRRVLIL EGQVGVINPA LQSIQYLGNE NFAGVDSLRL STKNKNGINH 701: LDVPVFVEPV NDPPFINVPQ YIMLESNGSE SLIFHPERDK FNFSVGDPDL VNFPGGESHF LVTFSLEVTD GFLLTNLPSE LINSTELKFK NLFQWQPIQT 801: YAAISKHVNV KASGIRFRGT IRQCNDLMQQ LLHRGGENGA VLTLKLSDMG NYGCFLDCTE RISLPLHAEA RVNLIRKRPL SSLGAHGTFM KYLVVVPFSF 901: FSIKLFSLLM VLIG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)