AT5G49140.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.972 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G11170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:19919085..19923415 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111804.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 980 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPCSSSGSS SCWKYDVFPS FRGEDVRGNF LSHLMKEFES KGIVTFKDDL IERSQTIGLE LKEAVRQSKI FVVIFSKNYA SSSWCLDELV EILKCKEERR 101: LIPIFYKVNP SDVRNQTGKF GRGFRETCEG KNDETQNKWK AALTEAANIA GEDSQSWKNE ADFLTKIAKD ILAKLNGTPS NDFENIIGIE SHMEKMVQLL 201: CLNDDDVRMV GIWGPAGIGK TTIARVLHSR FSGDFRFTVF MENVRGNYQR IVDSGGEYNL QARLQKEFLP IIFNQKDRKI NHLWKIEERL KKQKVLIVLG 301: DVDKVEQLEA LANETRWFGP GSRIIVTTKD KQILVGHEIN HIYEVKLPCR KTALEILCLY AFKQNVAPDD FMDVVVEVAE LSGHLPLGLR VLGSHMRGKS 401: KDRWKLELGR LTTSLDEKVE KILKISYDDL HIRDKALFLH IACMFNGENI DLVKQMLVNS DLDVSLGLQL LLDKSLIQIN DDREIVMHSL LLKMGKEVVC 501: QHSSEPGKRQ FLFNTKETCN ILSNNTGSEA VLGISLDTSE IQNDVFMSER VFEDMRNLKF LRFYNKKIDE NPSLKLHLPR GLNYLPAVRL LHWDSYPMKY 601: IPSQFRPECL VELRMMHSKV VKLWEGTQTL AYLKTIDLSF SNNLVEVPDL SKAISLETLC LEGCQSLAEL PSSVLNLHRL KWLRLTMCEK LEVIPLHINL 701: ASLEVLDMEG CLKLKSFPDI SKNIERIFMK NTGIEEIPPS ISQWSRLESL DISGCLNLKI FSHVPKSVVY IYLTDSGIER LPDCIKDLTW LHYLYVDNCR 801: KLVSLPELPS SIKILSAINC ESLERISSSF DCPNAKVEFS KSMNFDGEAR RVITQQWVYK RACLPGKEVP LEFSHRARGG SLTIHLEDEN VCSSSLRFKA 901: CILLFPSERN NICTVYCRLI GESGRLIAAH RFGGVVKDFV TPHLFIFNSV LLEEVDVIRF GFSSIHHEIT ECGVQILTDA |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)