AT5G49130.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.686 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G71870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:19915904..19917525 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54141.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.52 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.61 | ||||||||||||||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVEEDSRLI NLQHKYNPTM PEVVEELKRI WDISFPVAAM SILNYLKNMT SVVCMGRLGS LELAGGALAI GFTNITGYSV LSGLATGMEP LCGQAIGSKN 101: PSLASLTLKR TIFLLLLASL PISLLWLNLA PLMLMLRQQH DITRVASLYC SFSLPDLLAN SFLHPLRIYL RCKGTTWPLM WCTLVSVLLH LPITAFFTFY 201: ISLGVPGVAV SSFLTNFISL SLLLCYIYLE NNNNDKTTSK SLCLDTPLML YGSRDSGEND VWSTLVKFAV PSCIAVCLEW WWYEFMTVLA GYLPEPKVAL 301: AAAAIVIQTT SLMYTIPTAL SAAVSTRVSN ELGAGRPEKA KTAATVAVGA AVAVSVFGLV GTTVGREAWG KVFTADKVVL ELTAAVIPVI GACELANCPQ 401: TISCGILRGS ARPGIGAKIN FYAFYVVGAP VAVVLAFVWG LGFMGLCYGL LGAQLACAIS ILTVVYNTDW NKESLKAHDL VGKNVISPNV DQIIVKCEEG 501: LH |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)