AT5G49070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.959 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 3-ketoacyl-CoA synthase 21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
3-ketoacyl-CoA synthase 21 (KCS21); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: very long-chain fatty acid metabolic process, cuticle development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 6 (TAIR:AT1G68530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19888751..19890145 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52560.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 464 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNQTIHRVSP ISMSISELTT LLSSGVSVFE IFAGLLVVHL IYQRIRTRVK VYLLDFTCYR APDSNRVPMS TLIETIYLDD KLDQESIDFQ ARILERSWLS 101: NQTSIPRSLM EIPLKKSLSS VKIETMTTIF TSVEDLLRKN KLSPRSIDIL ITNCSLHSPS PSLSAMVINK FHMRSNIKSF NLSGMGCAAG ILSVNLANDL 201: LQAHRGSLAL IVSTEALNTH WYIGKDRSML LTNCLFRMGA AAVLMSSNDH DRDNAKYELL HVVRKNKAKD DRAYRCIYQD IDSDEKQGVS ITKDVISVAG 301: DMLKMNLTSL GPLVLPYLEQ FQYVIQHILC KKLKIYESNS SYTPNFKTAF EHFCIHTGGR AVIQAMEMNL KLTKVDIEPS KMTLHRFGNT SSSSIWYALS 401: YLEAKRRMKK GDRVLQIAFG SGFKCNSAVW RCIRKVEPNT ENKWLDFIDS YPVDVPDSTN IRPG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)