AT5G49000.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19864527..19865645 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42075.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.31 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 372 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSPERKRKK RSLEPSPEST PNPSLPDDLI VSILARVSRL YYPILSLVSK SSRTLVTSPE LYKTRSFFNR TESCLYVCLD FPPDPNPRWF TLYRKPNQNI 101: TEKTKNSSGF VLAPIPNHHS HSSSIVAIGS NIYAIGGSIE NAPSSKVSIL DCRSHTWHEA PSMRMKRNYP AANVVDGKIY VAGGLEEFDS SKWMEVFDIK 201: TQTWEFVLSP LAERFIYRSL VIEGEIYIFG DKVVTYKPKE DRWGGVGEHQ SMDLGLFFHS YCVIDNVLYC YRPGGIKWYE SEKRSWRKLR GLKGLSKLAS 301: SCVKLADYGG KMALLWDKYI PCSGNKSHSI SCAVVSLERC KNQGIRGKVE WFDDMLTVPS SYNFVGALAA TL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)