AT5G48960.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; FUNCTIONS IN: 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (InterPro:IPR008380); BEST Arabidopsis thaliana protein match is: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (TAIR:AT1G75210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:19849645..19853382 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72896.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 642 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPNFSVNVPQ LSSLYSTKTP KVRMNLCADQ VFDKKLLWRD MSTKMKFPSF SAAELPDLRK SNKRRGSLRM IKCRAAGADG GRVAVGDDVF SVTTSSKYEV 101: DYLGQSTKGD LNLKLDPLQS FGDGQATLEG PIEEVARTEA QAAENLIREL GIQGPFSAQH SPRGIFCSRT LNLRSISAIG YDMDYTLMHY NVMAWEGKAY 201: DYCMENLKSM GFPVDGLAFD PELVIRGLMI DKEKGNLVKA DRFGYVKRAM HGTKMLSNKA VSEIYGRELV DLRNQSRWEF LNTFFSVSEA LAYAQMVDRL 301: DDGFISADLG TLDYKGLYKA VAKALFRAHV EGQLKSEIMS KPELFVEPDP ELPLALLDQK EAGKKLLLIT NSDYHYTDKM MKHSFNKFLP NDMDWRDLFD 401: MVIVSARKPE FFQMSHPLYE VVTGEGLMRP CFKAETGGLY SGGSAQMIES SLNVHGDEIL YVGDHIYTDV SVSKVHLRWR TALICRELEE EYMALIGSRG 501: HREELIELIN QKEVVGDLFN QLRLALQRRS KGRPAQTLAA TNLDDQELTE TMQKLLIVMQ RLDDKIGLML ETDGELFNKR WGFLSRAGLW DKSHLMRQIE 601: KYADIYTSRV SNFLNYTPFM YFRSQEQSLA HDSPLPDAGI EN |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)