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AT5G48800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G08570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHXZeggNOG:ENOG410XRIYEMBL:AB012242EMBL:AK117251
EMBL:BX830207EMBL:CP002688EnsemblPlants:AT5G48800EnsemblPlants:AT5G48800.1
entrez:834938GeneID:834938Genevisible:Q9FKB6GO:GO:0005886
GO:GO:0016567hmmpanther:PTHR32370hmmpanther:PTHR32370:SF21HOGENOM:HOG000239180
InParanoid:Q9FKB6InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356
iPTMnet:Q9FKB6KEGG:ath:AT5G48800ncoils:CoilOMA:VITAMKC
PaxDb:Q9FKB6Pfam:PF00651Pfam:PF03000Pfam:Q9FKB6
Pfscan:PS50097Pfscan:PS51649PhylomeDB:Q9FKB6PRIDE:Q9FKB6
PRO:PR:Q9FKB6PROSITE:PS50097PROSITE:PS51649ProteinModelPortal:Q9FKB6
Proteomes:UP000006548RefSeq:NP_199691.1SMR:Q9FKB6STRING:3702.AT5G48800.1
SUPFAM:SSF54695TAIR:AT5G48800UniGene:At.23051UniGene:At.29823
UniPathway:UPA00143UniProt:Q9FKB6
Coordinates (TAIR10) chr5:+:19786881..19789003
Molecular Weight (calculated) 69553.00 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.38
Length 614 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKHHHQHLL LQHHQHLHHH QKLSLAKSSR QSCSEWIFRD VPSDITIEVN GGNFALHKFP LVSRSGRIRR IVAEHRDSDI SKVELLNLPG GAETFELAAK
101: FCYGINFEIT SSNVAQLFCV SDYLEMTEEY SKDNLASRTE EYLESIVCKN LEMCVQVLKQ SEILLPLADE LNIIGRCIDA IASKACAEQI ASSFSRLEYS
201: SSGRLHMSRQ VKSSGDGGDW WIEDLSVLRI DLYQRVMNAM KCRGVRPESI GASLVSYAER ELTKRSEHEQ TIVETIVTLL PVENLVVPIS FLFGLLRRAV
301: ILDTSVSCRL DLERRLGSQL DMATLDDLLI PSFRHAGDTL FDIDTVHRIL VNFSQQGGDD SEDEESVFEC DSPHSPSQTA MFKVAKLVDS YLAEIAPDAN
401: LDLSKFLLIA EALPPHARTL HDGLYRAIDL YLKAHQGLSD SDKKKLSKLI DFQKLSQEAG AHAAQNERLP LQSIVQVLYF EQLKLRSSLC SSYSDEEPKP
501: KQQQQQSWRI NSGALSATMS PKDNYASLRR ENRELKLELA RLRMRLNDLE KEHICMKRDM QRSHSRKFMS SFSKKMGKLS FFGHSSSRGS SSPSKQSFRT
601: DSKVLMERTC ASTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)