AT5G48770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT1G72840.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19773277..19777242 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 135272.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.30 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1190 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSLSSPP PCNYDVFLSF RGEDTRRTIV SHLYAALGAK GIITFKDDQD LEVGDHISSH LRRAIEGSKF AVVVLSERYT TSRWCLMELQ LIMELYNLGK 0101: LKVLPLFYEV DPSDVRHQRG SFGLERYQGP EFADIVQRWR VALCMVANLS GMVSRYCADE AMMLEEIVEV ISSRLASMQA TSFEDLVGME AHMENIRPLL 0201: KKDFDAEVCM VGIWGMGGIG KTTIAKYLYE QLASQFPAHS FIEDVGQICK KVDLKCIQQQ LLCDILSTKR VALMSIQNGA NLIRSRLGTL KVLFVLDGVD 0301: KVEQLHALAK EASWFGPGSR IIITTRDRRL LDSCRVTNKY EVKCLQNEDS LKIVKNIAFA GGVPTLDGYE RFAIRASQLA QGLPLALVAF GSFLRGATSI 0401: DEWEDAIDTL ETAPHQNIMD ILRSSYTNLD LRDKTIFIRV ACLFNGEPVS RVSTLLSETK RRIKGLAEKS LIHISKDGYI DIHSLIKQMA REIVVEESLY 0501: IPRQQRILWD PHNSYGVLES KTGTERIQGM TLHMCELPRA ASIDGSAFEQ MENLIFLKFF KHLNDRESKL NINSKNRMVL PRSLRLLHWD AYPLTTLLPT 0601: FPLSRLVELH LRYSNLENLW DGKMSLLELR MLDVTGSKNL TKLPDLSRAT KLEELIAKGC TRLEQIPETI GSLPSLKKLD VSHCDRLINL QMIIGELPAL 0701: QKRSPGLFRQ ASLSFPDAVV TLNSLTSLAI HGKLNFWLSH LRGKADHLCF SSEQWTPNKF LKQVQKTPKL MSEFYGFKSL DIMQFIYRKD SASFQCYSFS 0801: DFLWLTELNL INLNIESIPD DIGLLQVLQK LDLSGNDFTC LPTDMENLSS MKSLRLCNCL KLQTLPKLPQ LETLKLSNCI LLQSPLGHSA ARKDERGYRL 0901: AELWLDNCND VFELSYTFSH CTNLTYLDLS GNDMVTMPVT IRFLRLLNTL CLNDCKKLKS MVQLPPNLTS LYARGCTSLE IIHLPLDHSI KHVDLSYCPK 1001: LNEVANLMDR FLRCGRKEEV PQRFACLSGS RVPIYFDYQA REYSREISIP PIWHASEFVG FDACIIIACQ SPYHIKLSSS SYSCKQEDNQ SYRIDLKPDF 1101: VLPPESTRSS NDKEAFSAHH MFIFHVPSNV DFNEFSLEPK LVISEEFQST PGRIISYGVR VVLKTEEDDR NYDINCGNLS KKRKTDMLTI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)