suba logo
AT5G48595.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AdaBoost: extracellularBaCelLo: endoplasmic reticulumBaCelLo: extracellularBaCelLo: golgi
iPSORT: endoplasmic reticulumiPSORT: extracellulariPSORT: golgiMitoprot 2: mitochondrion
MultiLoc: extracellularPlant-mPloc: nucleusPlant-mPloc: plasma membranePlant-mPloc: plastid
Predotar: endoplasmic reticulumPredotar: extracellularPredotar: golgiPredSL: endoplasmic reticulum
PredSL: extracellularPredSL: golgiPProwler: endoplasmic reticulumPProwler: extracellular
PProwler: golgiSLPFA: endoplasmic reticulumSLPFA: extracellularSLPFA: golgi
SLP-Local: endoplasmic reticulumSLP-Local: extracellularSLP-Local: golgiSubLoc: extracellular
TargetP: endoplasmic reticulumTargetP: extracellularTargetP: golgiWoLF PSORT: extracellular
YLoc: extracellular
 SwissProt : extracellular 16381842
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Defensin-like (DEFL) family protein
Curator
Summary (TAIR10)		 Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)		 Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT5G48605.1); Has 33 Blast hits to 33 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB015468EMBL:CP002688EnsemblPlants:AT5G48595EnsemblPlants:AT5G48595.1
entrez:3771465GeneID:3771465GO:GO:0005576GO:GO:0031640
GO:GO:0050832Gramene:AT5G48595.1HOGENOM:HOG000015163iPTMnet:Q2V305
KEGG:ath:AT5G48595OMA:NIAHCENPaxDb:Q2V305Pfam:Q2V305
PhylomeDB:Q2V305PRIDE:Q2V305PRO:PR:Q2V305Proteomes:UP000006548
RefSeq:NP_001032035.1TAIR:AT5G48595TMHMM:TMhelixUniGene:At.63356
UniProt:Q2V305
Coordinates (TAIR10) chr5:+:19700640..19701022
Molecular Weight (calculated) 11019.60 Da
IEP (calculated) 7.82
GRAVY (calculated) 0.17
Length 98 amino acids
Sequence (TAIR10)
(BLAST) 		1: MKTIFVFLTL AVLVSSFFKK LFLRASNIMI KSISEGKSQF SGPALSPNID PADEHIGHSP EDMKIIFCQQ CAFHCIEKKK NIAHCENSIC RCTLEDIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)