AT5G48390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.822 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Defective in meiotic chromosome segregation. It is involved in crossover formation and involved in both male and female meiosis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATZIP4; FUNCTIONS IN: binding; INVOLVED IN: female meiosis, resolution of meiotic recombination intermediates, male meiosis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Meiosis specific protein SPO22 (InterPro:IPR013940), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19612078..19615363 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103749.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 936 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRIAEITTPD LRLHHRETDS HTHHPLLSEI ELLIQQSEAI SKDQPLPQSL PISLRQFLTR LSQLAPFPDN SFKLTIWKLS FRLWNACVDL ANAASLQSSL 101: TSAENIANLR HVAADMLFLA KDVTGVPSPT IKSSLFYYKT GLVYHSLKKF DLASDCFERA TEIVSKIDIA KISDAGEKKL FLDLNLARSR TAWEISDRNL 201: AVTLLNRAKN LLFGSPDHYK SLSNQFLAFG KSSLSRGDDD CSLNDALRLM NEALDLCEKG LGTAKTREDT TEFTAMRIKT LRFISAVHLQ KGEFENVIKC 301: VKVLRNGGNG SDGADQHASL PVLAMKAWLG LGRHSEAEKE LRGMVGNNDI PEAVWVSAVE AYFEVVGTAG AETAKGVFLG LLGRCHVSAK AALRVAHRVL 401: GESRGGDNGS RIRANVVAQL VSDERVVALF ASEAVTKERK AIHSVLWNSA SDHFRAKDYE TSAEMFEKSM LYIPHDIENR VFRAKGFRVL CLCYLGLSQL 501: DRALEYIEEA EKLEPNIACS FLKFKIYLQK KEHSCAIGQI DAMTSCLDFS PDYLSLSAHE AISCQALPVA VASLSKFLSF YISGKKMPTT EVVVFRTLVT 601: ILTQDIGSET EALNFMLQAQ SRASKLGTEC FFGLGETGKR EQNWFAATCW NLGSRCGKEK KYELCGEFLR LASEFYGYID TDESGEDKLM ICRSIILSVT 701: AMIALEKQTK SALTETQVKL AAELLVRAGK IMSSSLSDGK DCIMEPELIF MYTLLAYDIH GRLNNSAFQL LVVKTFAGSK SCHYNYLLQL GIFASQSPQS 801: NPDVSTFALN ECLSALIASA SPEYPTIALI IRKLISIASV HKGDTDDEEA ILKMYKQAYR IMVGLKEGEY PTEEGKWLAM TAWNRAALPV RLGQFETAKK 901: WLSIGLEIAD KVTGMDTYKA CMQDYLAGFQ TKVSSA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)