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AT5G48340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFSWeggNOG:ENOG4111H5QEMBL:AP000372EMBL:AY065204
EMBL:AY096510EMBL:CP002688EnsemblPlants:AT5G48340EnsemblPlants:AT5G48340.1
entrez:834887ExpressionAtlas:Q9LK80GeneID:834887Gramene:AT5G48340.1
hmmpanther:PTHR37766HOGENOM:HOG000238566OMA:WRLMNDEPhylomeDB:Q9LK80
Proteomes:UP000006548RefSeq:NP_199645.1TAIR:AT5G48340UniGene:At.28567
UniProt:Q9LK80
Coordinates (TAIR10) chr5:+:19590785..19592487
Molecular Weight (calculated) 59541.90 Da
IEP (calculated) 5.91
GRAVY (calculated) -0.46
Length 510 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNLFLSEPK WNDDAQKSSN INVILPLLNK LGSQIQSLVT HGARSEARLW LCSALSTISI SPSKQLNIFM KLLRSKPRKM QFLSQVLTMM FEKRPRKLGF
101: LLAKRSYILE KFFEGNQKRI LEWFSEFAYD GGSDHKRGAK ALAQFAFANR DICWEELEWR GKHGQSPAVV ATKPHYLLDL DVERTIQNFL DNVPEFWSSN
201: EFAESLKDGQ ILFLDTKFFI DLFIRFMYEE DMYDVWDAVE EFLREESFSS LTQHLLITLE ERDLCRFLEL LGNYFEPGIE SWDSGDSSRW LGVLLSRYVD
301: TESIDELLLL SSIINQGRQL LRLVRDENGN DEGELLKETM AEICRGLENE SSFSVILREL SKMKHIQVIK LLGLLSWTIH FRLSEECQTP DSWELLFREN
401: GIEFRRSSDH SLLSYNGFSE ESESDSDSRS RVSKKRHKRE KKKRKKKKKR AFDDDDDRGD DELLDLHSIS RSWLLSTDGF SATWTSVDLP EYIAKYCLST
501: WMKGLLARQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)