AT5G48330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 20331 Blast hits to 5924 proteins in 464 species: Archae - 100; Bacteria - 2715; Metazoa - 6825; Fungi - 1055; Plants - 2791; Viruses - 2; Other Eukaryotes - 6843 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19585989..19587729 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48320.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRSWSIAKL QISKVYSSDS RFCTHVLFNG VVRRQFTSTS GERRTVMSFG DGNLGALGLS SSSIPGMGMD AYEPTVVSNL PSDISSISAG HYHSLAVTSS 101: GEIWAWGRND EGQLGRIVID SSRDSRSEPK RVEGLENVNV QAAFASGVVS AAIGDDGSLW VWGRSKRGQL GLGNGIIEAR VPSRVENLAA EHVVKVSLGW 201: GHALALTVDG KVFGWGYVAD GRVGNVGLPL EASLLDSITD GSMKGHHAAG DLNLEAAEKK VVEAMSKEND MPIAWEPCLV EETCNEKVAD IACGSDHSLI 301: LCHDGTLLSA GSNIYGQLGR SKQDLGMKPV DITESPISIA AGLGHSLAIC NRGERNILSW GWNRSRQLGR GKPENLPREV EGFDGESPAS VSAGRVHSLC 401: VTEKGEAWVW GCGKNGRLGL GSSSDEPEPM LLEDVEGCVL QAVAGFDHSL ILVAE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)