AT5G48220.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.846 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Aldolase-type TIM barrel family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Aldolase-type TIM barrel family protein; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, tryptophan metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Indole-3-glycerol phosphate synthase, conserved site (InterPro:IPR001468), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT2G04400.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19550168..19552046 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40418.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.88 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 364 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIRELVSIAF QLQEFGIDVR LCALYESSGI TEGSDSALEA KVSEQEVGMY QNEVVESQGI RIRRRPPTGP PLHYVGPFEF RLQNEGNTPR NILEEIVWHK 101: DKEVAQMKER KPLYSLKKAL DNVPPAKDFI GALRSAHQRT GLPGLIAEVK KASPSRGILR EDFNPVEIAQ AYEKGGAACL SVLTDDKYFK GSYENLQAIM 201: EAGVKCPLLL KEFIVEAWQI YYGRSKGADA VLLIASVLPD LDIKYMIKIC KILGMATLVE VHDEREMDRV LAIEGVELIG INNRNLETFE VDLGITKKLL 301: EGERGELIRQ KDILVVGESG LFTPEDIAFV QEAGVKAVLV GESLIKQSDP GKAISTLFGR DVSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)