AT5G48220.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.498 plastid 0.434 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Aldolase-type TIM barrel family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Aldolase-type TIM barrel family protein; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, tryptophan metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase, conserved site (InterPro:IPR001468), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT2G04400.1); Has 8154 Blast hits to 8154 proteins in 2220 species: Archae - 205; Bacteria - 5386; Metazoa - 3; Fungi - 158; Plants - 84; Viruses - 0; Other Eukaryotes - 2318 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19550439..19552046 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35215.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.55 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 316 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYQNEVVESQ GIRIRRRPPT GPPLHYVGPF EFRLQNEGNT PRNILEEIVW HKDKEVAQMK ERKPLYSLKK ALDNVPPAKD FIGALRSAHQ RTGLPGLIAE 101: VKKASPSRGI LREDFNPVEI AQAYEKGGAA CLSVLTDDKY FKGSYENLQA IMEAGVKCPL LLKEFIVEAW QIYYGRSKGA DAVLLIASVL PDLDIKYMIK 201: ICKILGMATL VEVHDEREMD RVLAIEGVEL IGINNRNLET FEVDLGITKK LLEGERGELI RQKDILVVGE SGLFTPEDIA FVQEAGVKAV LVGESLIKQS 301: DPGKAISTLF GRDVSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)