AT5G47620.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.948 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G07810.1); Has 16528 Blast hits to 13333 proteins in 798 species: Archae - 2; Bacteria - 1803; Metazoa - 8027; Fungi - 1568; Plants - 3500; Viruses - 0; Other Eukaryotes - 1628 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19302548..19304106 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39310.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.28 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 371 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLKESSCLN ISLMVEAKKA VPRDDHVVFN KSNSSLQGSP GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV 101: DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT 201: QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER 301: GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)