AT5G47470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nodulin MtN21 /EamA-like transporter family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G16620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19254598..19256378 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39560.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.87 | ||||||||||||||||||||||||||||||||||||||||
| Length | 364 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQFFCVNLYR SVLNLLEERM KTEMIEEMVI VGGLVMVQFV YAGNSLLMSY LMSLGLGPFT IVIFSTFATF IILSPFAILF ERKQWPNELS LRLIGKLVLI 101: SFAGVTLFQS LFLEGIRLTS PAMATAMPNL APGLIFFIAW IVGLEKMNLK CVYSKLKILG TLLCVFGALA MSVMHSTSIS HKEEDDTPIF VFDRDKVVGC 201: IYLLGAVFVL STNVVLQAST LAEFPAPISL SAITALLGVL ITTVVLLLQN RKTKVLASSL ISFGNLVGYS VLAGAVSGAC VSFNGWAMKK RGPVFVSMFS 301: PFATVISVAF AVLTLGESVS LGSVGGMVLM FVGLYLVLWA KGKEGFSEIE SFESEFDSKK PLLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)