AT5G47440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT4G17350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19243570..19245204 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44936.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||
| Length | 406 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGGFYSDWN DSSSSLFGSE NPEHELEEGN VRSEEIVSQI PQPQTPREPM KFLSRSWSLS ASEISKALAQ KQRQQRDLFS VSQNSPRGFF QDVAADPLMA 101: ENIMNSAGTR RSGRLSKWFH HKQHTNPSTM RIPRKKDKAR VQKAHVHSAV SIAALAAGLA SVTSEESCSK ESCSMMALAL ASATELLASH CIDMAEQAGA 201: DHTCVASTVR SSVDIHSPGD LMTLTAAAAT ALRGEAALKV RQPKESRKNA TITPCERSFS DSHWPGENCQ FRLEEPNLPL EGELVQCARN GLQRNKRVCV 301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEISAWP CRKERENSEE VYFGLKTGQG LLEFKCKSKI QKQRWVAGIQ SNLRLVSCLE AAKCSLESLS 401: LSNRMR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)