AT5G47430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DWNN domain, a CCHC-type zinc finger | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT4G17410.1); Has 13590 Blast hits to 9527 proteins in 457 species: Archae - 2; Bacteria - 408; Metazoa - 7940; Fungi - 2101; Plants - 1227; Viruses - 27; Other Eukaryotes - 1885 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19235819..19240596 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99088.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.36 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||
| Length | 892 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIYYKFKSA RDYDTIAMDG PFISVGILKD KIFETKHLGT GKDLDIVVSN AQTNEEYLDE AMLIPKNTSV LIRRVPGRPR ITVITTQEPR IQNKVEDVQA 101: ETTNFPVADP SAAEFPEDEY DEFGTDLYSI PDTQDAQHII PRPHLATADD KVDEESKIQA LIDTPALDWQ QRQGQDTFGA GRGYGRGMPG RMNGRGFGME 201: RKTPPPGYVC HRCNIPGHFI QHCPTNGDPN YDVKRVKPPT GIPKSMLMAT PDGSYSLPSG AVAVLKPNED AFEKEMEGLP STTRSVGELP PELKCPLCKE 301: VMKDAALTSK CCYKSFCDKC IRDHIISKSM CVCGRSDVLA DDLLPNKTLR DTINRILEAG NDSTENVGSV GHIPDLESAR CPPPKALSPT TSVASKGEKK 401: PVLSNNNDAS TLKAPMEVAE ITSAPRASAE VNVEKPVDAC ESTQGSVIVK EATVSKLNTQ APKEEMQQQV AAGEPGKKKK KKPRVPGNDM QWNPVPDLAG 501: PDYMMQMGPG PQYFNGMQPG FNGVQPGFNG VQPGFNGFHP GFNGFGGPFP GAMPPFMGYG LNPMDMGFGG GMNMMHPDPF MAQGFGFPNI PPPHRDLAEM 601: GNRMNLQRAM MGRDEAEARN AEMLRKRENE RRPEGGKMFR DGENSRMMMN NGTSASASSI NPNKSRQAPP PPIHDYDRRR RPEKRLSPEH PPTRKNISPS 701: RDSKRKSERY PDERDRQRDR ERSRHQDVDR EHDRTRDRRD EDRSRDHRHH RGETERSQHH HRKRSEPPSS EPPVPATKAE IENNLKSSVF ARISFPEEET 801: SSGKRRKVPS SSSTSVTDPS ASASAAAAVG TSVHRHSSRK EIEVADYESS DEDRHFKRKP SRYARSPPVV VSDVSEDKLR YSKRGKGERS RA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)