AT5G47380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G66600.3); Has 575 Blast hits to 559 proteins in 76 species: Archae - 2; Bacteria - 39; Metazoa - 40; Fungi - 0; Plants - 462; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19221472..19224471 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70154.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.03 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||
| Length | 618 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGFDLNKDG NKQRRNGDSW HCLDSHKHGR SKSASSERDL HTSGNGASQS ANNFTRMQAS SVQTTANKRP KPLHNCQMLT KNNVSSNDRA SLERDVEQLH 101: LRLQQEKSMR MVLERAMGRA SSSLSPGHRH FAGQANELIT EIELLEAEVT NREHHVLSLY RSIFEQTVSR APSEQSSSIS SPAHHIKQPP RKQDPNVISN 201: AFCSSNNFPL KPWHAMVTLK DSSRKTSKKD QSSQFQFRNC IPSTTSCSSQ AKSHFLKDSV TVKSPSQRTL KDHLYQCPNK LSEDMVKCMS SVYFWLCCSA 301: MSADPEKRIL SRSSTSNVII PKNIMNEDRA WSCRSMVEVS WISSDKKRFS QVTYAINNYR LLVEQLERVT INQMEGNAKL AFWINIYNAL LMHAYLAYGV 401: PAHSLRRLAL FHKSAYNIGG HIINANTIEY SIFCFQTPRN GRWLETIIST ALRKKPAEDK VKSMFSLDKP EPLVCFALCI GALSDPVLKA YTASNVKEEL 501: DASKREFLGA NVVVKMQKKV LLPKIIERFT KEASLSFDDL MRWLIDNADE KLGESIQKCV QGKPNNKKAS QVVEWLPYSS KFRYVFSKDL MEKKPCETMK 601: KAILVYKRNY LLSQTALA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)