AT5G47175.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : low-molecular-weight cysteine-rich 3 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
low-molecular-weight cysteine-rich 3 (LCR3); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 20 (TAIR:AT5G47075.1); Has 56 Blast hits to 56 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:19160066..19160412 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 8727.86 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||
| Length | 78 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MTKSIISAFF IILILGMMVN EIEGQQQQQR CEEALTEIDC GAGNCNALCL QKRKGLGRCV QRTPCDKLKC MCYYPCSS | ||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)