AT5G47010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA helicase, putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19072009..19078856 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 136876.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1254 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSQQSDLFD TASQPDTVAD EYTFLEFNTQ GDSEFDYQDF GSPTAWPTPS DSISIADVAD RGEGGAAADH HSEASSPSSL SAGAGNGAKV GRGGVGGSGG 0101: VSSSSQVDAL AAGVGNLNFE ETGDDDGFDY GKNDFTEHAC KYCGISNPAC VVRCNVASCR KWFCNSRGNT SGSHIVNHLV RAKHKEVCLH RDSPLGETIL 0201: ECYNCGCRNV FLLGFISAKT DSVVVLLCRD PCLNVNALKD MNWDLSQWCP LIDDRCFLPW LVKVPSEQEQ LRARQISAQQ INKIEELWKT NPDATLEDLE 0301: KPGVDDEPQP VQPKYEDAYQ YQNVFAPLIK LEADYDKMMK ESQSKENLTV RWDIGLNKKR VAYFVFPKEE NELRLVPGDE LRLRYSGDAV HPSWQSVGHV 0401: IKLTAQEEVA LELRANQGVP IDVNHGFSVD FVWKSTSFDR MQGAMKNFAV DETSVSGYIY HQLLGHEVEA QMVRNTLPRR FGVPGLPELN ASQVNAVKSV 0501: LQKPISLIQG PPGTGKTVTS AAIVYHMAKQ GQGQVLVCAP SNVAVDQLAE KISATGLKVV RLCAKSREAV SSPVEYLTLH YQVRHLDTSE KSELHKLQQL 0601: KDEQGELSSS DEKKYKNLKR ATEREITQSA DVICCTCVGA ADLRLSNFRF RQVLIDESTQ ATEPECLIPL VLGVKQVVLV GDHCQLGPVI MCKKAARAGL 0701: AQSLFERLVT LGIKPIRLQV QYRMHPALSE FPSNSFYEGT LQNGVTIIER QTTGIDFPWP VPNRPMFFYV QLGQEEISAS GTSYLNRTEA ANVEKLVTAF 0801: LKSGVVPSQI GVITPYEGQR AYIVNYMARN GSLRQQLYKE IEVASVDSFQ GREKDYIILS CVRSNEHQGI GFLNDPRRLN VALTRARYGI VILGNPKVLS 0901: KQPLWNGLLT HYKEHECLVE GPLNNLKQSM VQFQKPRKIY NDRRLFYGGG AGMIGNDNFG SGNPNADRRG SRGRAGGSYL PSGPPNGARP GLHPAGYPIP 1001: RVPLSPFPGG PPSQPYAIPT RGPVGAVPHA PQPGNHGFGA GRGTSVGGHL PHQQATQHNV GTIGPSLNFP LDSPNSQPSP GGPLSQPGYG SQAFRDGFSM 1101: GGISQDFLAD DIKSQGSHDP YNMADFATQA SPGGFAVDYA TQGAHGAFPG NFMNQNSQGG YSRFSGINDF MSQEYMAHGG QGLFTQAGFI DSSQDDGQQN 1201: PYGVNNPNLQ SQGLPNSLYS QPFAHYNTQP LNLSGPQQSQ PNQSSQNPKH PYNG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)