AT5G46870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.650 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 416 Blast hits to 410 proteins in 105 species: Archae - 0; Bacteria - 15; Metazoa - 8; Fungi - 115; Plants - 241; Viruses - 7; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19015486..19016990 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31898.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.95 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||
| Length | 295 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMVTVKVSN VSLEATERDL KEFFSFSGDI AYLETQSEND GSKLAYVTFK DLQGAETAVL LTGSTIVDSS VTVTMSPDYQ LPPDALASIE SLKESNKSSS 101: PTREDVSVFR KAEDVVSGMI SKGFVLGKDA IAKAKSLDEK HQLTSTASAR VTSFDKRIGF TEKINTGTTV VSEKVKEVDQ KFQVTEKTKS AIAAAEQTVS 201: NAGSAIMKNR YVLTGATWVT GAFNRVSKAA EEVGQKAKEK VGLAEEEEEE KKKVVDEVAI VHLTESPKAL DQSEQDSKLP ESKSQPHKEL NASVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)