AT5G46560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18888061..18890090 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 44391.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.22 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||
| Length | 387 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSIPRKRPK SETRTGRTPK SSSSSSPIRS MLEPPQSLFP SKGEFFTLLK VLLVACAVAF TCNFLSKSLS SNPSKSFCDS NFNPIDSDLD ICEPCPINGE 101: CYQGKLQCNL GYKNQRNLCV EDGEINESTK KLVGYFERKV CESYAHNECY GTGTIWVPEN DVWTELRSNS FLSNLDESAY NFLKGKAVEG VTELLEKRTN 201: SNGIDELKCP ESVAKSYKPL TCRLHQWILR HILIISSSCA MLVGSAMLRR RIQRKQCFSR RVEELYDQVC DFLEENAVAS NSAETSNCEP WVIASWLRDY 301: LLLPRERRDP LLWTKVEELI KEDSRIDRYE KLLKGEKKVV WEWQVEGSLS LSKLKKQRET QKKVRKSIDS STSLQEYYNR RIAETSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)