AT5G46490.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G31540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18850848..18853843 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98800.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.97 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 858 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSSSRNW LYDVFLSFRG GDVRVTFRSH FLKEFDRKLI TAFRDNEIER SHSLWPDLEQ AIKDSRIAVV VFSKNYASSS WCLNELLEIV NCNDKIIIPV 101: FYGVDPSQVR YQIGDFGRIF EKTCKRQTEE VKNQWKKALT LVANMLGFDS AKWDDEAKMI EEIANDVLRK LLLTTSKDFD DFVGLEDHIA NMSALLDLES 201: KEVKMVGIWG SSGIGKTTIA RALFNNLFRH FQVRKFIDRS FAYKSREIHS SANPDDHNMK LHLQESFLSE ILRMPNIKID DPTALEERLK YQKVLIIIDD 301: LDDIMVLDTL VGQTQWFGYG SRIIVVTNDK HFLTAHGIDH IYEVSFPTDV HACQMLCQSA FKQNYAPEGF GDLVVDVVRH ACSFPLGLNL LGKYLRGRNE 401: EYWMDILPRL ENGLRLDGKI EKILRISYDG LDSEDQEIFR HIACIFIHMK VTTIKSLLAE SDVSFALENL ADKSLIHVRQ GYVVMHRSLQ EMGRKIVRIQ 501: SIDNPGEREF LVDPNDIHDV LNACTGTQKV LGISLNTRNI VELDVHESAI KGMSNLRFLE IKDFISQWKK ALIDVSKIAF DSTEWNRGLI TQNYVNLLLL 601: STTPKEYEEL VGIEDHTAEM SLPATKSFDF EDDGLHLPAS FDYLPPTLKL LCWPKFPMRC MPYDFCPENL VKLEMRESKL YKLWEGVVPL TCLKEMDLDG 701: SVNLKEIPDL SMATNLETLN FENCKSLVEL PSFIRNLNKL LKLNMAFCNS LETLPTGFNL KSLDRLSFSE CTKLKTFPKF STNISVLNLF GTNIEEYPSH 801: LHLENLVEFS ISKEESNMIQ WEGAKVSSSK LNILSKLFYY HCLYLNYCRR LKFCTLVY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)