AT5G46220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.661 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF616) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF616); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT4G38500.1); Has 226 Blast hits to 226 proteins in 19 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18738827..18741964 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53884.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.58 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||
| Length | 462 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKFITTTLS PPLYARSKLL CFSLLYLFST IFLFLYVSLS RNQCIFRYSP FDPIQAKLFS YPSSYGEHKY ALPTHRSSCS SPIFFSDYWT VLKEIQSILS 101: GSSPKENLRY INGKSESFGG NFSTQKRFSY FNHSNIDVEV PCGFFRDFPV SNSDRVEMEK CGLVVASAIF NDHDKIRQPV GLGVKTLETV CFYMFIDDKT 201: LNSLFHHNVI LKNNPSDYRV GAWRIIKISK SENLYLNPAM NGVIPKYLIH RLFPNSKFSI WVDAKIQLMI DPLLLIHSML VVPEVDMAIS KHPFFVNTME 301: EAMATARWKK WGDVDGLRIQ METYCEHGLK PWSSSKLPYP TDVPDTALIL RRHGIRSNLF SCFMFNELEA FNPRDQLAFA FVRDHINPKV KMNMFEVEVF 401: EQVVVEYRHN LKKIESSTYE EQEEEQKQES LRTIQKRRKW LDHESWSLNR SSCKNYLTDM WG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)