AT5G46200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of Unknown Function (DUF239) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G17860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18728050..18730247 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46420.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.21 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||
| Length | 408 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLWLKLIS ISLIYLNVIA KSTPHQESEF ECVSIDKQSA LQHPLMKNHR IQTRPSRELL SILSTSNGNI LREIDLKGSE ECPKGQVPIH KQKTNLTNSL 101: IHPQQIHRAG RILKQSRRDK KKKKNNRRKK NKNKLMIPSA LLSQKNKIPH HQPKLFTETH LHYAIVRTFE NTTKKWRGAQ ALFNINKPRV VQNQFSKAWI 201: WLNYIQGSLM SSIQFGWAVH TNLYSDDRPR LTTFWMSDQH PKGCYNALCP GGYVQIHKSI YPGLVYDKVN ALGGKQNTVH LSVAEDPVTK NWVLTIGSIM 301: IGYWPRQSQM VDGASEVYFG GFAGNTASSQ PTTSPPMGTG EFPTKDLSRS CFMKQLKYVL SDYSVVDINA NEVEQYVDSR KCYGVMFLKY VDYDSRETLT 401: FGGPGGQC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)