AT5G46040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.812 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18671397..18673551 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66205.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 586 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTVEEVGDDY TKDGTVDLRG NRVRRSQTGR WKACSFVVVY EVFERMAYYG ISSNLVIYMT TKLHQGTVKS SNNVTNWVGT SWLTPILGAY VADAHFGRYI 101: TFVISSAIYL LGMALLTLSV SLPGLKPPKC STANVENCEK ASVIQLAVFF GALYTLAIGT GGTKPNISTI GADQFDEFDP KDKIHKHSFF NWWMFSIFFG 201: TFFATTVLVY VQDNVGWAIG YGLSTLGLAF SIFIFLLGTR LYRHKLPMGS PFTKMARVIV ASLRKAREPM SSDSTRFYEL PPMEYASKRA FPIHSTSSLR 301: FLNRASLKTG STHKWRLCTI TEVEETKQML KMLPVLFVTF VPSMMLAQIM TLFIKQGTTL DRRLTNNFSI PPASLLGFTT FSMLVSIVIY DRVFVKFMRK 401: LTGNPRGITL LQRMGIGMIL HILIMIIASI TERYRLKVAA EHGLTHQTAV PIPLSIFTLL PQYVLMGLAD AFIEIAKLEF FYDQAPESMK SLGTSYTSTS 501: MAVGYFMSSI LLSSVSQITK KQGRGWIQNN LNESRLDNYY MFFAVLNLLN FILFLVVIRF YEYRADVTQS ANVEQKEPNM VDNYNE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)