AT5G45990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : crooked neck protein, putative / cell cycle protein, putative | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18651324..18653892 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80899.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.29 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||
| Length | 673 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGKDAEVKL PRTTRVKNKT PAPVQITAEQ ILREARERQE AEIRPPKQKI TDSTELSDYR LRRRKEFEDQ IRRARWNIQV WVKYAKWEES QMDYARARSV 101: WERALEGEYR NHTLWVKYAE FEMKNKFVNN ARNVWDRSVT LLPRVDQLWE KYIYMEEKLG NVTGARQIFE RWMNWSPDQK AWLCFIKFEL RYNEIERARS 201: IYERFVLCHP KVSAFIRYAK FEMKRGGQVK LAREVYERAV DKLANDEEAE ILFVSFAEFE ERCKEVERAR FIYKFALDHI RKGRAEELYK KFVAFEKQYG 301: DKEGIEDAIV GKKRFEYEDE VSKNPLNYDS WFDYVRLEES VGNKDRIREI YERAIANVPP AQEKRFWQRY IYLWINYALY EEIETKDVER TRDVYRECLK 401: LIPHTKFSFA KIWLLAAEYE IRQLNLTGAR QILGNAIGKA PKVKIFKKYI EMELKLVNID RCRKLYERFL EWSPENCYAW RNYAEFEISL AETERARAIF 501: ELAISQPALD MPELLWKTYI DFEISEGEFE KTRALYERLL DRTKHCKVWI SFAKFEASAS EHKEDGIKSA RVIFDRANTY YKDTTPELEE ERATLLEDWL 601: NMETGFGELG DVSVVQSKLP KKLKKRKMTS REDGSTEYEE YFDYLFPEES GTTNLKILEA AYKWKKLKGE ECV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)