AT5G45875.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : SCR-like 27 | ||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein). | ||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
SCR-like 27 (SCRL27); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCR-like 26 (TAIR:AT4G22105.1); Has 64 Blast hits to 64 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:18608457..18608911 | ||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 10736.20 Da | ||||||||||||||||||||||||||||||||
IEP (calculated) | 9.05 | ||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||
Length | 93 amino acids | ||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
1: MKSTTLFMVS CVLIFCVLSH VREVKSVETK AKRVKKVCEK AQVFEQNCGW DGNKTCIRGF NKIKEYPFHC ECGIYDAPNS RRICKCKFPY SPC | ||||||||||||||||||||||||||||||||
See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)