AT5G45775.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribosomal L5P family protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, C-terminal (InterPro:IPR020928), Ribosomal protein L5, N-terminal (InterPro:IPR020927); BEST Arabidopsis thaliana protein match is: ribosomal protein L16B (TAIR:AT4G18730.1); Has 7630 Blast hits to 7630 proteins in 2736 species: Archae - 313; Bacteria - 4930; Metazoa - 255; Fungi - 164; Plants - 275; Viruses - 0; Other Eukaryotes - 1693 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18565281..18566377 | ||||||||||||
| Molecular Weight (calculated) | 19776.10 Da | ||||||||||||
| IEP (calculated) | 10.45 | ||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||
| Length | 172 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD TGCFGFGIQE 101: HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)