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AT5G45760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.946
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHTZeggNOG:ENOG4111IGIEMBL:CP002688EnsemblPlants:AT5G45760
EnsemblPlants:AT5G45760.1entrez:834615ExpressionAtlas:F4KEM4Gene3D:2.130.10.10
GeneID:834615Gramene:AT5G45760.1hmmpanther:PTHR22847hmmpanther:PTHR22847:SF412
InParanoid:F4KEM4InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775KEGG:ath:AT5G45760OMA:MEEPRKLPaxDb:F4KEM4
Pfam:PF00400Pfscan:PS50082Pfscan:PS50294PRIDE:F4KEM4
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:F4KEM4
Proteomes:UP000006548RefSeq:NP_568648.1scanprosite:PS00678SMART:SM00320
SMR:F4KEM4SUPFAM:SSF50978TAIR:AT5G45760UniGene:At.29996
UniProt:F4KEM4
Coordinates (TAIR10) chr5:+:18561121..18563005
Molecular Weight (calculated) 39506.80 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.22
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MATAMEEPRK LRGHKSTATC CIASRDRPGI VLTSGEDGCI CWFDLRCKDV QFIIDVGTEP VSSLCFKTGN ENILYASCGN EIKSFDVHTL SATSWKPLES
101: YNYNKDEVNQ VVCNGRSSFL ASADDSGDVK IIDLGQKCLY KTLRAGHTSI CSSVQFIPWR PWEVITGGLD SKLVLWDFSK GRSQKIIDFG SDTNNNSGQC
201: LNPAFVHSIA IPEMDMVDKL DKICAVARGD GIVNLINIES ELSRKGTSSK GSSSSSSNNV VKRVCLDYSV GGHNSAVSCV AFSLFQEKGR FLISGGNDKT
301: VKIWDCFKCL DPNNNNNNSD LLHLNINLSK KVNWLCTNQS DSENLVVCDT TRVVKVYSIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)