AT5G45720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AAA-type ATPase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA polymerase III complex; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G18820.1); Has 13188 Blast hits to 13168 proteins in 2852 species: Archae - 365; Bacteria - 7695; Metazoa - 381; Fungi - 497; Plants - 312; Viruses - 26; Other Eukaryotes - 3912 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18543338..18546629 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108149.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.92 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 966 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRVASSRVL KDSNGDIGEH LRNHIHLTNC IHLKNHMHNN NKQSPVLTDR SLLMRDLVVL QRSRSLRDPS ASPNLKEDHQ DSREGRRRSG LRLSGSSPIV 101: SFGTSKVTPS DEKFDRSSRK SYRVEEVNEV YSVPSVKSVS KDRINKKVNE AIVKTLSDQL NEVGGDSDDL VSCNVRPRGD GCRRRKFRGT RRAGRAVNVR 201: DNAAGNESEM SIASNSVPRG EKYEGEEGGG GRDREQNMSC GIPFNWSRIH HRGKTFLDIA GRSLSCGISD SKGRKGEAGT PMFSDSSSSD REALPLLVDS 301: ADNEEWVHDY SGELGIFADN LLKNGKDSVI GKKSSRKNTR WHQSFTQKYA PRTFRDLLGQ NLVVQALSNA IAKRRVGLLY VFHGPNGTGK TSCARVFARA 401: LNCHSTEQSK PCGVCSSCVS YDDGKNRYIR EMGPVKSFDF ENLLDKTNIR QQQKQQLVLI FDDCDTMSTD CWNTLSKIVD RAPRRVVFVL VCSSLDVLPH 501: IIVSRCQKFF FPKLKDVDII DSLQLIASKE EIDIDKDALK LVASRSDGSL RDAEMTLEQL SLLGTRISVP LVQEMVGLIS DEKLVDLLDL ALSADTVNTV 601: KNLRIIMETG LEPLALMSQL ATVITDILAG SYDFTKDQCK RKFFRRQPLS KEDMEKLKQA LKTLSESEKQ LRVSNDKLTW LTAALLQLAP DKQYLLPHSS 701: SADASFNHTP LTDSDPSNHV VAGTRRDDSK QGFSCKNRPS VEDIWLAVIE NVRVNGLREF LYKEGKIFSI SIGSAPMVQL MFNSPIAKST AENFEEHILK 801: AFEAVLGSPV TLEMRTESKK DLGFSSLQGL SNGERFRESG RSEIVEVADS ESPMTRVRRK HLEASQNQNQ NQNQSIVRGK VSLAQVIKQA EGNSWSKHKA 901: VEIANKLEQE NLKLEPRSRS LICWKASRST RRKLSRLKVR TRKLRLHSLL KLVSCGKCLS TRSPPR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)